Index

_

__init__() (pyoomph.generic.codegen.ODEEquations method) (pyoomph.generic.problem.Problem method)

_pyoomph module

A

abort_current_run() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) absolute() (in module pyoomph.expressions) acos() (in module pyoomph.expressions) actions_after_successful_newton_solve() (pyoomph.generic.assembly.FixedMeshMaxQuadraticNonlinearAssembly method) activate_bifurcation_tracking() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) activate_coordinates_as_dofs() (pyoomph.generic.codegen.Equations method) (pyoomph.generic.Equations method) activate_duarte_debug() (pyoomph.meshes.mesh.ODEStorageMesh method) activate_eigenbranch_tracking() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) activate_periodic_orbit_handler() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) activity_coefficients (pyoomph.materials.generic.MixtureLiquidProperties attribute) ActivityModel (class in pyoomph.materials.activity) adapt() (pyoomph.generic.problem.Problem method) adapt_by_elemental_errors() (pyoomph.meshes.mesh.ODEStorageMesh method) adaptive_unsteady_newton_solve() (pyoomph.generic.problem.Problem method) add_additional_parametric_variable() (pyoomph.expressions.coordsys.BaseDifferentialGeometryCoordinateSystem method) add_arrow_key() (pyoomph.output.plotting.MatplotlibPlotter method) add_boundary_node() (pyoomph.meshes.mesh.ODEStorageMesh method) add_brick_3d_C1() (_pyoomph.MeshTemplateElementCollection method) add_brick_3d_C2() (_pyoomph.MeshTemplateElementCollection method) add_colorbar() (pyoomph.output.plotting.MatplotlibPlotter method) add_equations() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) add_facet_to_curve_entity() (_pyoomph.MeshTemplate method) (pyoomph.meshes.mesh.MeshTemplate method) add_functional_minimization() (pyoomph.generic.codegen.BaseEquations method) add_global_dof() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) add_interior_facet_residual() (pyoomph.generic.codegen.BaseEquations method) add_interpolated_nodes_at() (pyoomph.meshes.mesh.ODEStorageMesh method) add_line_1d_C1() (_pyoomph.MeshTemplateElementCollection method) add_line_1d_C2() (_pyoomph.MeshTemplateElementCollection method) add_local_function() (pyoomph.generic.codegen.BaseEquations method) add_mesh() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) add_mesh_template() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) add_node() (_pyoomph.MeshTemplate method) (pyoomph.meshes.mesh.MeshTemplate method) add_node_to_mesh() (pyoomph.meshes.mesh.ODEStorageMesh method) add_node_unique() (_pyoomph.MeshTemplate method) (pyoomph.meshes.mesh.MeshTemplate method) add_nodes_to_boundary() (_pyoomph.MeshTemplate method) (pyoomph.meshes.mesh.MeshTemplate method) add_periodic_node_pair() (_pyoomph.MeshTemplate method) (pyoomph.meshes.mesh.MeshTemplate method)

add_plot() (pyoomph.output.plotting.MatplotlibPlotter method) add_point_element() (_pyoomph.MeshTemplateElementCollection method) add_quad_2d_C1() (_pyoomph.MeshTemplateElementCollection method) add_quad_2d_C2() (_pyoomph.MeshTemplateElementCollection method) add_residual() (pyoomph.generic.codegen.BaseEquations method) add_scale_bar() (pyoomph.output.plotting.MatplotlibPlotter method) add_sub_mesh() (pyoomph.generic.problem.Problem method) add_SV_tri_2d_C1() (_pyoomph.MeshTemplateElementCollection method) add_tetra_3d_C1() (_pyoomph.MeshTemplateElementCollection method) add_tetra_3d_C2() (_pyoomph.MeshTemplateElementCollection method) add_text() (pyoomph.output.plotting.MatplotlibPlotter method) add_time_label() (pyoomph.output.plotting.MatplotlibPlotter method) add_time_stepper_pt() (pyoomph.generic.problem.Problem method) add_tri_2d_C1() (_pyoomph.MeshTemplateElementCollection method) add_tri_2d_C2() (_pyoomph.MeshTemplateElementCollection method) additional_equations (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) additional_local_coordinates (pyoomph.expressions.coordsys.BaseDifferentialGeometryCoordinateSystem attribute) additional_vector_component_suffixes (pyoomph.expressions.coordsys.BaseDifferentialGeometryCoordinateSystem attribute) AdvectionDiffusionEquations (class in pyoomph.equations.advection_diffusion) AdvectionDiffusionFluxInterface (class in pyoomph.equations.advection_diffusion) AdvectionDiffusionInfinity (class in pyoomph.equations.advection_diffusion) after_bifurcation_tracking_step() (pyoomph.generic.problem.Problem method) AIOMFAC (class in pyoomph.materials.UNIFAC.aiomfac) also_on_interfaces (pyoomph.equations.generic.SubstituteVarByExpression attribute) always_take_one_newton_step (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) Any (class in pyoomph.typings) apex_height (pyoomph.utils.dropgeom.DropletGeometry attribute) apply_on_interface() (pyoomph.materials.surfactant_isotherms.FrumkinIsotherm method) (pyoomph.materials.surfactant_isotherms.HenryIsotherm method) (pyoomph.materials.surfactant_isotherms.LangmuirIsotherm method) (pyoomph.materials.surfactant_isotherms.SurfactantIsotherm method) (pyoomph.materials.surfactant_isotherms.VanDerWaalsIsotherm method) (pyoomph.materials.surfactant_isotherms.VolmerIsotherm method) arclength_continuation() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) as_pyoomph_mesh() (pyoomph.meshes.mesh.ODEStorageMesh method) asin() (in module pyoomph.expressions) assemble_eigenproblem_matrices() (pyoomph.generic.problem.Problem method) assembly_handler_pt() (pyoomph.generic.problem.Problem method) assign_eqn_numbers() (pyoomph.generic.problem.Problem method) assign_initial_values_impulsive() (pyoomph.generic.problem.Problem method) atan() (in module pyoomph.expressions) atan2() (in module pyoomph.expressions) available_domains() (pyoomph.meshes.mesh.MeshTemplate method) (pyoomph.meshes.MeshTemplate method) AverageConstraint (class in pyoomph.equations.generic) avg() (in module pyoomph.expressions.generic) AxisymmetryBC (class in pyoomph.meshes) (class in pyoomph.meshes.bcs)

B

background_color (pyoomph.output.plotting.MatplotlibPlotter attribute) BalanceGravityAtFarField (class in pyoomph.equations.multi_component) base_radius (pyoomph.utils.dropgeom.DropletGeometry attribute) BaseDifferentialGeometryCoordinateSystem (class in pyoomph.expressions.coordsys) BaseEquations (class in pyoomph.generic.codegen) BaseGasProperties (class in pyoomph.materials.generic) BaseInterfaceProperties (class in pyoomph.materials.generic) BaseLiquidProperties (class in pyoomph.materials.generic) BaseMixedProperties (class in pyoomph.materials.generic)

BaseMovingMeshEquations (class in pyoomph.equations.ALE) BasePlotter (class in pyoomph.output.plotting) BaseSolidConstitutiveLaw (class in pyoomph.equations.solid) BaseSolidProperties (class in pyoomph.materials.generic) before_assigning_equations_postorder() (pyoomph.generic.codegen.BaseEquations method) before_assigning_equations_preorder() (pyoomph.generic.codegen.BaseEquations method) boundary_coordinate_bool() (pyoomph.meshes.mesh.ODEStorageMesh method) boundary_element_pt() (pyoomph.meshes.mesh.ODEStorageMesh method) boundary_node_pt() (pyoomph.meshes.mesh.ODEStorageMesh method) build_global_mesh() (pyoomph.generic.problem.Problem method)

C

CahnHilliardEquation (class in pyoomph.equations.cahn_hilliard) CahnHilliardEquationsForNSCH (class in pyoomph.equations.cahn_hilliard) CahnHilliardWettingInterface (class in pyoomph.equations.cahn_hilliard) CassieBaxterContactLine (class in pyoomph.equations.contact_angle) cast() (in module pyoomph.typings) check_integrity() (pyoomph.meshes.mesh.ODEStorageMesh method) check_mesh_integrity (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) circle_arc() (pyoomph.meshes.gmsh.GmshTemplate method) CircularMesh (class in pyoomph.meshes.simplemeshes) clear() (pyoomph.utils.paramscan.ParallelParameterScan method) components (pyoomph.materials.generic.MaterialProperties attribute) (pyoomph.materials.generic.PureLiquidProperties attribute) CompositionAdvectionDiffusionEquations (class in pyoomph.equations.multi_component) CompositionAdvectionDiffusionFluxEquations (class in pyoomph.equations.multi_component) CompositionDiffusionEquations() (in module pyoomph.equations.multi_component) CompositionDiffusionInfinityEquations (class in pyoomph.equations.multi_component) CompositionFlowEquations() (in module pyoomph.equations.multi_component) ConnectFieldsAtInterface (class in pyoomph.equations.generic) ConnectMeshAtInterface (class in pyoomph.equations.ALE)

ConnectVelocityAtInterface (class in pyoomph.equations.navier_stokes) contact_angle (pyoomph.utils.dropgeom.DropletGeometry attribute) continuation_data_in_states (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) continue_from_outdir() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) contract() (in module pyoomph.expressions.generic) cos() (in module pyoomph.expressions) cosh() (in module pyoomph.expressions) crash_on_invalid_triangulation (pyoomph.output.plotting.MatplotlibPlotter attribute) create_curved_entity() (pyoomph.meshes.mesh.MeshTemplate method) (pyoomph.meshes.MeshTemplate method) create_eigendynamics_animation() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) create_lines() (pyoomph.meshes.gmsh.GmshTemplate method) create_text_file_output() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) csr_rows_to_coo_rows() (in module _pyoomph) curv_radius (pyoomph.utils.dropgeom.DropletGeometry attribute) CustomMathExpression (class in pyoomph.expressions.cb)

D

DarcyEquation (class in pyoomph.equations.darcy) deactivate_bifurcation_tracking() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) def_vars (pyoomph.equations.generic.SubstituteVarByExpression attribute) default_1d_file_extension (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) default_ccode_expression_mode (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) default_mass_flux_coefficient (pyoomph.materials.mass_transfer.DifferenceDrivenMassTransferModel attribute) default_resolution (pyoomph.meshes.gmsh.GmshTemplate attribute) default_spatial_integration_order (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) default_surface_tension (pyoomph.materials.generic.BaseLiquidProperties attribute) (pyoomph.materials.generic.MixtureLiquidProperties attribute) (pyoomph.materials.generic.PureLiquidProperties attribute) default_timestepping_scheme (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) DefaultLiquidGasInterface (class in pyoomph.materials.generic) define_fields() (pyoomph.generic.codegen.BaseEquations method) define_geometry() (pyoomph.meshes.gmsh.GmshTemplate method) (pyoomph.meshes.LineMesh method) (pyoomph.meshes.mesh.MeshTemplate method) (pyoomph.meshes.MeshTemplate method) (pyoomph.meshes.simplemeshes.LineMesh method) define_global_parameter() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) define_named_var() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) define_ode_variable() (pyoomph.generic.codegen.ODEEquations method) (pyoomph.generic.ODEEquations method) define_plot() (pyoomph.output.plotting.BasePlotter method) define_problem() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) define_residuals() (pyoomph.generic.codegen.BaseEquations method) define_scalar_field() (pyoomph.generic.codegen.Equations method) (pyoomph.generic.Equations method) define_vector_field() (pyoomph.generic.codegen.Equations method) (pyoomph.generic.Equations method)

deflated_continuation() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) deflated_solve_by_eigenperturbation() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) DeformableSolidEquations (class in pyoomph.equations.solid) delayed_lambda_expansion() (in module pyoomph.expressions.generic) derivative() (pyoomph.expressions.cb.CustomMathExpression method) describe_global_dofs() (pyoomph.meshes.mesh.ODEStorageMesh method) describe_my_dofs() (pyoomph.meshes.mesh.ODEStorageMesh method) determinant() (in module pyoomph.expressions) DeterministicRandomField (class in pyoomph.expressions.utils) diff() (in module pyoomph.expressions.generic) DifferenceDrivenMassTransferModel (class in pyoomph.materials.mass_transfer) DifferenceDrivenMassTransferModelLiquidGas (class in pyoomph.materials.mass_transfer) diffusion_volume_for_Fuller_eq (pyoomph.materials.generic.PureGasProperties attribute) DiffusionEquation (class in pyoomph.equations.poisson) DirichletBC (class in pyoomph.meshes) (class in pyoomph.meshes.bcs) distribute() (pyoomph.generic.problem.Problem method) div() (in module pyoomph.expressions) do_call_remeshing_when_necessary (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) dof_strings_to_global_equations() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) DortmundUNIFAC (class in pyoomph.materials.UNIFAC.dortmund) dot() (in module pyoomph.expressions.generic) double_dot() (in module pyoomph.expressions.generic) doubly_adaptive_unsteady_newton_solve() (pyoomph.generic.problem.Problem method) dpi (pyoomph.output.plotting.MatplotlibPlotter attribute) DropletGeometry (class in pyoomph.utils.dropgeom) dyadic() (in module pyoomph.expressions.generic) dynamic_viscosity (pyoomph.materials.generic.BaseGasProperties attribute) (pyoomph.materials.generic.BaseLiquidProperties attribute) (pyoomph.materials.generic.MixtureGasProperties attribute) (pyoomph.materials.generic.MixtureLiquidProperties attribute) (pyoomph.materials.generic.PureGasProperties attribute) (pyoomph.materials.generic.PureLiquidProperties attribute) DynamicContactLineEquations (class in pyoomph.equations.contact_angle) DynamicODEEquations (class in pyoomph.equations.ode)

E

eigen_data_in_states (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) eigenmode (pyoomph.output.plotting.BasePlotter attribute) eigenvector (pyoomph.output.plotting.BasePlotter attribute) eigenvector_position_scale (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) element_pt() (pyoomph.meshes.mesh.ODEStorageMesh method) ElementSizeForSUPG (class in pyoomph.equations.SUPG) ElementSpace (class in pyoomph.equations.generic) enable_store_local_dof_pt_in_elements() (pyoomph.generic.problem.Problem method) EnforcedBC (class in pyoomph.meshes) (class in pyoomph.meshes.bcs) EnforcedDirichlet (class in pyoomph.meshes) (class in pyoomph.meshes.bcs) EnforcedInterfacialLaplaceSmoothing (class in pyoomph.equations.ALE) EnforcedInterfacialLaplaceSmoothingCorner (class in pyoomph.equations.ALE) EnforceVolumeByPressure (class in pyoomph.equations.ALE) ensure_dummy_values_to_be_dummy() (pyoomph.generic.problem.Problem method) ensure_external_data() (pyoomph.meshes.mesh.ODEStorageMesh method) ensure_halos_for_periodic_boundaries() (pyoomph.meshes.mesh.ODEStorageMesh method) EquationCompilationFlags (class in pyoomph.equations.generic) Equations (class in pyoomph.generic) (class in pyoomph.generic.codegen) eval() (pyoomph.expressions.cb.CustomMathExpression method)

evaluate_at_condition() (pyoomph.materials.generic.BaseGasProperties method) (pyoomph.materials.generic.BaseLiquidProperties method) (pyoomph.materials.generic.BaseSolidProperties method) (pyoomph.materials.generic.MaterialProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) (pyoomph.materials.generic.PureGasProperties method) (pyoomph.materials.generic.PureLiquidProperties method) (pyoomph.materials.generic.PureSolidProperties method) (pyoomph.materials.generic.SurfactantProperties method) evaluate_at_initial_surfactant_concentrations() (pyoomph.materials.generic.DefaultLiquidGasInterface method) (pyoomph.materials.generic.LiquidGasInterfaceProperties method) evaluate_at_midpoint() (in module pyoomph.expressions.generic) evaluate_in_domain() (in module pyoomph.expressions.generic) evaluate_in_past() (in module pyoomph.expressions.generic) evaluate_local_expression_at_nodes() (pyoomph.meshes.mesh.ODEStorageMesh method) exp() (in module pyoomph.expressions) expand_additional_field() (pyoomph.generic.codegen.ODEEquations method) (pyoomph.generic.ODEEquations method) extra_compiler_flags (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) ExtremumObservables (class in pyoomph.equations.generic) extrude() (pyoomph.meshes.gmsh.GmshTemplate method) extrude_generated_mesh (pyoomph.meshes.gmsh.GmshTemplate attribute)

F

face_index_at_boundary() (pyoomph.meshes.mesh.ODEStorageMesh method) factor (pyoomph.output.plotting.MatplotLibColorbar attribute) fd_epsilon (pyoomph.expressions.cb.CustomMathExpression attribute) feenableexcept() (in module _pyoomph) file_ext (pyoomph.output.plotting.MatplotlibPlotter attribute) file_trunk (pyoomph.output.plotting.MatplotlibPlotter attribute) fill_dof_types() (pyoomph.meshes.mesh.ODEStorageMesh method) fill_node_index_to_node_map() (pyoomph.meshes.mesh.ODEStorageMesh method)

FinaliseMPI() (in module _pyoomph) find_bifurcation_via_eigenvalues() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) FixedMeshMaxQuadraticNonlinearAssembly (class in pyoomph.generic.assembly) flush_element_storage() (pyoomph.meshes.mesh.ODEStorageMesh method) flush_sub_meshes() (pyoomph.generic.problem.Problem method) FrumkinIsotherm (class in pyoomph.materials.surfactant_isotherms) FSIConnection (class in pyoomph.equations.solid)

G

gas_components (pyoomph.materials.generic.LiquidGasInterfaceProperties attribute) GeneralizedHookeanSolidConstitutiveLaw (class in pyoomph.equations.solid) generate_and_compile_bulk_element_code() (pyoomph.generic.problem.Problem method) generate_interface_elements() (pyoomph.meshes.mesh.ODEStorageMesh method) GenericContactLineModel (class in pyoomph.equations.contact_angle) GenericProblemHooks (class in pyoomph.generic) (class in pyoomph.generic.problem) get_adjacent_boundary_names() (_pyoomph.MeshTemplateElementCollection method) get_arc_length_parameter_derivative() (pyoomph.generic.problem.Problem method) get_arc_length_theta_sqr() (pyoomph.generic.problem.Problem method) get_arclength_dof_current_vector() (pyoomph.generic.problem.Problem method) get_arclength_dof_derivative_vector() (pyoomph.generic.problem.Problem method) get_argument_unit() (pyoomph.expressions.cb.CustomMathExpression method) get_azimuthal_r0_info() (pyoomph.generic.codegen.BaseEquations method) get_bifurcation_tracking_mode() (pyoomph.generic.problem.Problem method) get_boundary_index() (pyoomph.meshes.mesh.ODEStorageMesh method) get_boundary_names() (pyoomph.meshes.mesh.ODEStorageMesh method) get_cached_mesh_data() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_ccompiler() (pyoomph.generic.problem.Problem method) get_coordinate_system() (pyoomph.generic.codegen.ODEEquations method) (pyoomph.generic.ODEEquations method) (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_current_dofs() (pyoomph.generic.problem.Problem method) get_current_pinned_values() (pyoomph.generic.problem.Problem method) get_current_time() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_diffusion_coefficient() (pyoomph.materials.generic.BaseMixedProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) get_diffusive_mass_flux_for() (pyoomph.materials.generic.BaseMixedProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) get_dof_description() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_domain() (pyoomph.meshes.mesh.MeshTemplate method) (pyoomph.meshes.MeshTemplate method) get_driving_frequency() (pyoomph.utils.periodic_driving_response.PeriodicDrivingResponse method) get_driving_mode() (pyoomph.utils.periodic_driving_response.PeriodicDrivingResponse method) get_driving_omega() (pyoomph.utils.periodic_driving_response.PeriodicDrivingResponse method) get_eigen_solver() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_eigenvalue() (pyoomph.output.plotting.BasePlotter method) get_element_dimension() (_pyoomph.MeshTemplateElementCollection method) (pyoomph.generic.codegen.BaseEquations method) (pyoomph.meshes.mesh.ODEStorageMesh method) get_element_h() (pyoomph.equations.SUPG.ElementSizeForSUPG method) get_elemental_errors() (pyoomph.meshes.mesh.ODEStorageMesh method) get_equations() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_field_information() (pyoomph.meshes.mesh.ODEStorageMesh method) get_floquet_multipliers() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_gammaij() (pyoomph.equations.solid.BaseSolidConstitutiveLaw method) get_gas_properties() (pyoomph.materials.generic.DefaultLiquidGasInterface method) (pyoomph.materials.generic.LiquidGasInterfaceProperties method) get_Gij() (pyoomph.equations.solid.BaseSolidConstitutiveLaw method) get_gij() (pyoomph.equations.solid.BaseSolidConstitutiveLaw method) get_global_parameter() (pyoomph.generic.problem.Problem method) get_global_parameter_names() (pyoomph.generic.problem.Problem method) get_history_dofs() (pyoomph.generic.assembly.FixedMeshMaxQuadraticNonlinearAssembly method) (pyoomph.generic.problem.Problem method) get_id_name() (pyoomph.expressions.cb.CustomMathExpression method) get_information_string() (_pyoomph.MeshTemplateCurvedEntityBase method) get_init_ds() (pyoomph.generic.problem.PeriodicOrbit method) get_interface_properties() (in module pyoomph.materials.generic) get_la_solver() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_last_eigenmodes_k() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_last_eigenmodes_m() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_last_eigenvalues() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_last_eigenvectors() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_last_jacobian_setup_time() (pyoomph.generic.problem.Problem method) get_last_linear_solver_solution_time() (pyoomph.generic.problem.Problem method) get_last_residual_convergence() (pyoomph.generic.problem.Problem method) get_latent_heat_of() (pyoomph.materials.generic.DefaultLiquidGasInterface method) (pyoomph.materials.generic.LiquidGasInterfaceProperties method) get_latent_heat_of_evaporation() (pyoomph.materials.generic.MixtureLiquidProperties method) (pyoomph.materials.generic.PureLiquidProperties method) (pyoomph.materials.generic.SurfactantProperties method) get_liquid_properties() (pyoomph.materials.generic.DefaultLiquidGasInterface method) (pyoomph.materials.generic.LiquidGasInterfaceProperties method) get_mass_fraction_field() (pyoomph.materials.generic.BaseMixedProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) get_mass_transfer_model() (pyoomph.materials.generic.DefaultLiquidGasInterface method) (pyoomph.materials.generic.LiquidGasInterfaceProperties method) get_mesh() (pyoomph.generic.codegen.ODEEquations method) (pyoomph.generic.ODEEquations method) (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_mole_fraction_field() (pyoomph.materials.generic.BaseMixedProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) get_nodal_dimension() (pyoomph.generic.codegen.BaseEquations method) get_node_position() (_pyoomph.MeshTemplate method) (pyoomph.meshes.mesh.MeshTemplate method) get_node_reordering() (pyoomph.meshes.mesh.ODEStorageMesh method) get_normal() (pyoomph.generic.codegen.BaseEquations method) get_num_time_steps() (pyoomph.generic.problem.PeriodicOrbit method) get_ode() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_opposite_parent_domain() (pyoomph.generic.codegen.Equations method) (pyoomph.generic.Equations method) get_opposite_parent_equations() (pyoomph.generic.codegen.InterfaceEquations method) (pyoomph.generic.InterfaceEquations method) get_opposite_side_of_interface() (pyoomph.generic.codegen.Equations method) (pyoomph.generic.Equations method) get_order_of_space() (in module pyoomph.expressions.generic) get_output_directory() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_output_scale() (pyoomph.meshes.mesh.ODEStorageMesh method) get_parameter_derivative() (pyoomph.generic.problem.Problem method) get_parametric_from_pos() (_pyoomph.MeshTemplateCurvedEntityBase method) get_parent_domain() (pyoomph.generic.codegen.BaseEquations method) (pyoomph.generic.codegen.ODEEquations method) (pyoomph.generic.ODEEquations method) get_parent_equations() (pyoomph.generic.codegen.InterfaceEquations method) (pyoomph.generic.InterfaceEquations method) get_pos_from_parametric() (_pyoomph.MeshTemplateCurvedEntityBase method) get_problem() (pyoomph.output.plotting.BasePlotter method) get_pure_component() (pyoomph.materials.generic.BaseMixedProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) (pyoomph.materials.generic.PureLiquidProperties method) (pyoomph.materials.generic.SurfactantProperties method)

get_pure_gas() (in module pyoomph.materials.generic) get_pure_liquid() (in module pyoomph.materials.generic) get_pure_solid() (in module pyoomph.materials.generic) get_refinement_pattern() (pyoomph.meshes.mesh.ODEStorageMesh method) get_residuals() (pyoomph.generic.problem.Problem method) get_residuals_and_jacobian() (pyoomph.generic.assembly.FixedMeshMaxQuadraticNonlinearAssembly method) get_result_unit() (pyoomph.expressions.cb.CustomMathExpression method) get_scaling() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) get_second_order_directional_derivative() (pyoomph.generic.problem.Problem method) get_sigma() (pyoomph.equations.solid.BaseSolidConstitutiveLaw method) get_Solver_callback() (in module _pyoomph) get_surface_diffusivity() (pyoomph.materials.generic.DefaultLiquidGasInterface method) (pyoomph.materials.generic.LiquidGasInterfaceProperties method) get_surfactant() (in module pyoomph.materials.generic) get_T() (pyoomph.generic.problem.PeriodicOrbit method) get_unpinned_motion_velocity_expression() (pyoomph.equations.contact_angle.UnpinnedContactLine method) get_value() (pyoomph.meshes.mesh.ODEStorageMesh method) get_values_at_zetas() (pyoomph.meshes.mesh.ODEStorageMesh method) get_vapor_mass_concentration() (pyoomph.materials.generic.BaseLiquidProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) (pyoomph.materials.generic.PureLiquidProperties method) (pyoomph.materials.generic.SurfactantProperties method) get_vapor_pressure_for() (pyoomph.materials.generic.MixtureLiquidProperties method) (pyoomph.materials.generic.PureLiquidProperties method) (pyoomph.materials.generic.SurfactantProperties method) get_verbosity_flag() (in module _pyoomph) get_weak_dirichlet_terms_for_DG() (pyoomph.generic.codegen.Equations method) (pyoomph.generic.Equations method) GiNaC_absolute() (in module _pyoomph) GiNaC_acos() (in module _pyoomph) GiNaC_asin() (in module _pyoomph) GiNaC_atan() (in module _pyoomph) GiNaC_atan2() (in module _pyoomph) GiNaC_collect() (in module _pyoomph) GiNaC_collect_common_factors() (in module _pyoomph) GiNaC_collect_units() (in module _pyoomph) GiNaC_contract() (in module _pyoomph) GiNaC_cos() (in module _pyoomph) GiNaC_cosh() (in module _pyoomph) GiNaC_debug_ex() (in module _pyoomph) GiNaC_delayed_expansion() (in module _pyoomph) GiNaC_determinant() (in module _pyoomph) GiNaC_Diff() (in module _pyoomph) GiNaC_diff() (in module _pyoomph) GiNaC_dimtestfunction() (in module _pyoomph) GiNaC_dimtestfunction_from_var() (in module _pyoomph) GiNaC_directional_derivative() (in module _pyoomph) GiNaC_div() (in module _pyoomph) GiNaC_dot() (in module _pyoomph) GiNaC_double_dot() (in module _pyoomph) GiNaC_eval_at_expansion_mode() (in module _pyoomph) GiNaC_eval_in_domain() (in module _pyoomph) GiNaC_eval_in_past() (in module _pyoomph) GiNaC_EvalFlag() (in module _pyoomph) GiNaC_exp() (in module _pyoomph) GiNaC_expand() (in module _pyoomph) GiNaC_factor() (in module _pyoomph) GiNaC_FakeExponentialMode() (in module _pyoomph) GiNaC_field() (in module _pyoomph) GiNaC_general_weak_differential_contribution() (in module _pyoomph) GiNaC_get_global_symbol() (in module _pyoomph) GiNaC_get_imag_part() (in module _pyoomph) GiNaC_get_real_part() (in module _pyoomph) GiNaC_grad() (in module _pyoomph) GiNaC_heaviside() (in module _pyoomph) GiNaC_imaginary_i() (in module _pyoomph) GiNaC_internal_function_with_element_arg() (in module _pyoomph) GiNaC_inverse_matrix() (in module _pyoomph) GiNaC_is_a_matrix() (in module _pyoomph) GiNaC_log() (in module _pyoomph) GiNaC_matproduct() (in module _pyoomph) GiNaC_Matrix() (in module _pyoomph) GiNaC_maximum() (in module _pyoomph) GiNaC_minimize_functional_derivative() (in module _pyoomph) GiNaC_minimum() (in module _pyoomph) GiNaC_new_symbol() (in module _pyoomph) GiNaC_nondimfield() (in module _pyoomph) GiNaC_normal() (in module _pyoomph) GiNaC_piecewise_geq0() (in module _pyoomph) GiNaC_python_cb_function() (in module _pyoomph) GiNaC_python_multi_cb_function() (in module _pyoomph) GiNaC_python_multi_cb_indexed_result() (in module _pyoomph) GiNaC_rational_number() (in module _pyoomph) GiNaC_remove_mode_from_jacobian_or_hessian() (in module _pyoomph) GiNaC_scale() (in module _pyoomph) GiNaC_sep_base_units() (in module _pyoomph) GiNaC_series() (in module _pyoomph) GiNaC_signum() (in module _pyoomph) GiNaC_sin() (in module _pyoomph) GiNaC_sinh() (in module _pyoomph) GiNaC_split_subexpressions_in_real_and_imaginary_parts() (in module _pyoomph) GiNaC_subexpression() (in module _pyoomph) GiNaC_subs() (in module _pyoomph) GiNaC_subsfields() (in module _pyoomph) GiNaC_SymSubs() (in module _pyoomph) GiNaC_tan() (in module _pyoomph) GiNaC_tanh() (in module _pyoomph) GiNaC_testfunction() (in module _pyoomph) GiNaC_testfunction_from_var() (in module _pyoomph) GiNaC_testscale() (in module _pyoomph) GiNaC_time_stepper_weight() (in module _pyoomph) GiNaC_TimeSymbol() (in module _pyoomph) GiNaC_trace() (in module _pyoomph) GiNaC_transpose() (in module _pyoomph) GiNaC_unit() (in module _pyoomph) GiNaC_unit_matrix() (in module _pyoomph) GiNaC_UnitVect() (in module _pyoomph) GiNaC_Vect() (in module _pyoomph) GiNaC_vector_dim() (in module _pyoomph) GiNaC_weak() (in module _pyoomph) GiNaC_wrap_coordinate_system() (in module _pyoomph) gitignore_output (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) GlobalLagrangeMultiplier (class in pyoomph.generic) (class in pyoomph.generic.codegen) GmshTemplate (class in pyoomph.meshes.gmsh) GmshTemplate.GmshFakeEntry (class in pyoomph.meshes.gmsh) go_to_param() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) grad() (in module pyoomph.expressions.generic) guess_nearest_bifurcation_type() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method)

H

HarmonicOscillator (class in pyoomph.equations.harmonic_oscillator) has_domain() (pyoomph.meshes.mesh.MeshTemplate method) (pyoomph.meshes.MeshTemplate method) has_interface_dof_id() (pyoomph.meshes.mesh.ODEStorageMesh method) has_tcc() (in module _pyoomph)

heaviside() (in module pyoomph.expressions) HelmholtzEquation (class in pyoomph.equations.helmholtz) HenryIsotherm (class in pyoomph.materials.surfactant_isotherms) hide_all_ticks (pyoomph.output.plotting.MatplotLibColorbar attribute) hide_some_ticks (pyoomph.output.plotting.MatplotLibColorbar attribute) HyperelasticSmoothedMesh (class in pyoomph.equations.ALE)

I

identity_matrix() (in module pyoomph.expressions.generic) ignore_command_line (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) imag_part() (in module pyoomph.expressions) image_size (pyoomph.output.plotting.MatplotlibPlotter attribute) imaginary_i() (in module pyoomph.expressions) InactiveDirichletBC (class in pyoomph.meshes) (class in pyoomph.meshes.bcs) IncompressibleSolidConstitutiveLaw (class in pyoomph.equations.solid) initial_adaption_steps (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) initial_condition (pyoomph.materials.generic.BaseGasProperties attribute) (pyoomph.materials.generic.BaseLiquidProperties attribute) (pyoomph.materials.generic.BaseSolidProperties attribute) (pyoomph.materials.generic.MaterialProperties attribute) InitialCondition (class in pyoomph.equations.generic) initialise() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) initialise_dt() (pyoomph.generic.problem.Problem method) InitMPI() (in module _pyoomph) IntegralConstraint (class in pyoomph.equations.generic) IntegralObservableOutput (class in pyoomph.output.generic) IntegralObservables (class in pyoomph.equations.generic) InterfaceEquations (class in pyoomph.generic) (class in pyoomph.generic.codegen) InteriorBoundaryOrientation (class in pyoomph.meshes) (class in pyoomph.meshes.bcs)

invalidate_cache() (pyoomph.generic.assembly.FixedMeshMaxQuadraticNonlinearAssembly method) invalidate_cached_mesh_data() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) invalidate_lagrangian_kdtree() (pyoomph.meshes.mesh.ODEStorageMesh method) invalidate_time_history() (pyoomph.generic.assembly.FixedMeshMaxQuadraticNonlinearAssembly method) inverse_matrix() (in module pyoomph.expressions) invisible (pyoomph.output.plotting.MatplotLibColorbar attribute) is_boundary_coordinate_defined() (pyoomph.meshes.mesh.ODEStorageMesh method) is_DG_space() (in module pyoomph.expressions.generic) is_distributed() (pyoomph.generic.problem.Problem method) is_incompressible() (pyoomph.equations.solid.BaseSolidConstitutiveLaw method) (pyoomph.equations.solid.IncompressibleSolidConstitutiveLaw method) is_initialised() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) is_mesh_distributed() (pyoomph.meshes.mesh.ODEStorageMesh method) is_normal_mode_stability_set_up() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) is_pure (pyoomph.materials.generic.BaseGasProperties attribute) (pyoomph.materials.generic.BaseLiquidProperties attribute) (pyoomph.materials.generic.BaseSolidProperties attribute) (pyoomph.materials.generic.MaterialProperties attribute) is_quiet() (pyoomph.generic.problem.Problem method) is_stable_solution() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) is_zero() (in module pyoomph.expressions.generic) iterate_over_driving_frequencies() (pyoomph.utils.periodic_driving_response.PeriodicDrivingResponse method) iterate_over_multiple_solutions_by_deflation() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method)

J

jump() (in module pyoomph.expressions.generic)

K

KuramotoSivashinskyBoundary (class in pyoomph.equations.kuramoto_sivashinsky)

KuramotoSivashinskyEquations (class in pyoomph.equations.kuramoto_sivashinsky) KwokNeumannContactLine (class in pyoomph.equations.contact_angle)

L

lagrangian_dimension() (_pyoomph.MeshTemplateElementCollection method) LangmuirIsotherm (class in pyoomph.materials.surfactant_isotherms) LaplaceSmoothedMesh (class in pyoomph.equations.ALE) latent_heat_of_evaporation (pyoomph.materials.generic.PureLiquidProperties attribute) (pyoomph.materials.generic.SurfactantProperties attribute) latex_printer (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) length (pyoomph.output.plotting.MatplotLibColorbar attribute) line() (pyoomph.meshes.gmsh.GmshTemplate method) LineMesh (class in pyoomph.meshes) (class in pyoomph.meshes.simplemeshes) liquid_components (pyoomph.materials.generic.LiquidGasInterfaceProperties attribute) LiquidGasInterfaceProperties (class in pyoomph.materials.generic) list_integral_functions() (pyoomph.meshes.mesh.ODEStorageMesh method)

list_local_expressions() (pyoomph.meshes.mesh.ODEStorageMesh method) load_from_strings() (_pyoomph.MeshTemplateCurvedEntityBase static method) LocalExpressions (class in pyoomph.equations.generic) log() (in module pyoomph.expressions) logfile_name (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) LubricationBoundary (class in pyoomph.equations.lubrication) LubricationBoundaryByLagrange (class in pyoomph.equations.lubrication) LubricationBulkField (class in pyoomph.equations.lubrication) LubricationEquationOnNavierStokes (class in pyoomph.equations.lubrication) LubricationEquations (class in pyoomph.equations.lubrication) LubricationHeightAveragedBulkVelocity (class in pyoomph.equations.lubrication) LubricationVelocityAtH (class in pyoomph.equations.lubrication) LyapunovExponentCalculator (class in pyoomph.utils.lyapunov)

M

make_static() (pyoomph.materials.generic.BaseMixedProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) mass_density (pyoomph.materials.generic.BaseGasProperties attribute) (pyoomph.materials.generic.BaseLiquidProperties attribute) (pyoomph.materials.generic.BaseSolidProperties attribute) (pyoomph.materials.generic.MaterialProperties attribute) mass_density_from_ideal_gas_law() (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.PureGasProperties method) MassTransferModelBase (class in pyoomph.materials.mass_transfer) material_derivative() (in module pyoomph.expressions.generic) MaterialProperties (class in pyoomph.materials.generic) MatplotLibArrowKey (class in pyoomph.output.plotting) MatplotLibColorbar (class in pyoomph.output.plotting) MatplotLibOverlayBase (class in pyoomph.output.plotting) MatplotlibPlotter (class in pyoomph.output.plotting) MatplotlibText (class in pyoomph.output.plotting) matproduct() (in module pyoomph.expressions.generic) matrix() (in module pyoomph.expressions.generic) max_newton_iterations (pyoomph.generic.problem.Problem property) max_nodal_dimension (pyoomph.expressions.coordsys.BaseDifferentialGeometryCoordinateSystem attribute) max_permitted_error (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) (pyoomph.meshes.mesh.MeshTemplate attribute) (pyoomph.meshes.MeshTemplate attribute) max_refinement_level (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) (pyoomph.meshes.mesh.MeshTemplate attribute) (pyoomph.meshes.MeshTemplate attribute) max_residuals (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) maximum() (in module pyoomph.expressions) mesh_mode (pyoomph.meshes.gmsh.GmshTemplate attribute) mesh_pt() (pyoomph.generic.problem.Problem method) mesh_size_factor (pyoomph.meshes.gmsh.GmshTemplate attribute) mesh_velocity() (in module pyoomph.expressions.generic) MeshDataCartesianExtrusion (class in pyoomph.meshes.meshdatacache) MeshDataCombineWithEigenfunction (class in pyoomph.meshes.meshdatacache) MeshDataRotationalExtrusion (class in pyoomph.meshes.meshdatacache) MeshFileOutput (class in pyoomph.output.meshio) MeshTemplate (class in _pyoomph) (class in pyoomph.meshes) (class in pyoomph.meshes.mesh) MeshTemplateCurvedEntityBase (class in _pyoomph) MeshTemplateElementCollection (class in _pyoomph) min_permitted_error (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) (pyoomph.meshes.mesh.MeshTemplate attribute) (pyoomph.meshes.MeshTemplate attribute) min_refinement_level (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) (pyoomph.meshes.mesh.MeshTemplate attribute) (pyoomph.meshes.MeshTemplate attribute) minimum() (in module pyoomph.expressions) mirror_mesh (pyoomph.meshes.gmsh.GmshTemplate attribute) Mixture() (in module pyoomph.materials.generic) MixtureGasProperties (class in pyoomph.materials.generic) MixtureLiquidProperties (class in pyoomph.materials.generic) module _pyoomph pyoomph pyoomph.equations pyoomph.equations.advection_diffusion pyoomph.equations.ALE pyoomph.equations.cahn_hilliard pyoomph.equations.contact_angle pyoomph.equations.darcy pyoomph.equations.generic pyoomph.equations.harmonic_oscillator pyoomph.equations.helmholtz pyoomph.equations.kuramoto_sivashinsky pyoomph.equations.low_order_NSCH pyoomph.equations.lubrication pyoomph.equations.multi_component pyoomph.equations.navier_stokes pyoomph.equations.NSCH pyoomph.equations.ode pyoomph.equations.poisson pyoomph.equations.potential_flow pyoomph.equations.solid pyoomph.equations.stokes_stream_func pyoomph.equations.SUPG pyoomph.equations.topological_changes pyoomph.equations.tracers pyoomph.expressions pyoomph.expressions.cb pyoomph.expressions.coordsys pyoomph.expressions.generic pyoomph.expressions.interpol pyoomph.expressions.phys_consts pyoomph.expressions.tensor_funcs pyoomph.expressions.units pyoomph.expressions.utils pyoomph.generic pyoomph.generic.assembly pyoomph.generic.ccompiler pyoomph.generic.codegen pyoomph.generic.mpi pyoomph.generic.problem pyoomph.jitbridge pyoomph.materials pyoomph.materials.activity pyoomph.materials.default_materials pyoomph.materials.generic pyoomph.materials.mass_transfer pyoomph.materials.surfactant_isotherms pyoomph.materials.UNIFAC pyoomph.materials.UNIFAC.aiomfac pyoomph.materials.UNIFAC.dortmund pyoomph.materials.UNIFAC.original pyoomph.meshes pyoomph.meshes.bcs pyoomph.meshes.curved_entities pyoomph.meshes.droplet_meshes pyoomph.meshes.gmsh pyoomph.meshes.interpolator pyoomph.meshes.mesh pyoomph.meshes.meshdatacache pyoomph.meshes.PFEM pyoomph.meshes.remesher pyoomph.meshes.simplemeshes pyoomph.meshes.zeta pyoomph.output pyoomph.output.generic pyoomph.output.latex pyoomph.output.meshio pyoomph.output.plotting pyoomph.output.states pyoomph.solvers pyoomph.solvers.generic pyoomph.solvers.load_solver_from_cmd_line pyoomph.solvers.pardiso pyoomph.solvers.scipy pyoomph.typings pyoomph.utils pyoomph.utils.bifurcation_gui pyoomph.utils.dropgeom pyoomph.utils.lyapunov pyoomph.utils.num_text_out pyoomph.utils.paramscan pyoomph.utils.periodic_driving_response pyoomph.utils.smallest_circle

molar_mass (pyoomph.materials.generic.BaseGasProperties attribute) (pyoomph.materials.generic.BaseLiquidProperties attribute) (pyoomph.materials.generic.BaseSolidProperties attribute) (pyoomph.materials.generic.MaterialProperties attribute) MultiComponentNavierStokesInterface (class in pyoomph.equations.multi_component) MultiComponentNavierStokesInterface.MassTransferModelBase (class in pyoomph.equations.multi_component)

N

name (pyoomph.materials.generic.BaseGasProperties attribute) (pyoomph.materials.generic.BaseLiquidProperties attribute) (pyoomph.materials.generic.BaseSolidProperties attribute) (pyoomph.materials.generic.MaterialProperties attribute) NavierStokesAzimuthalComponent (class in pyoomph.equations.navier_stokes) NavierStokesContactAngle (class in pyoomph.equations.navier_stokes) NavierStokesEquations (class in pyoomph.equations.navier_stokes) NavierStokesFreeSurface (class in pyoomph.equations.navier_stokes) NavierStokesPrescribedNormalVelocity (class in pyoomph.equations.navier_stokes) NavierStokesSlipLength (class in pyoomph.equations.navier_stokes) nboundary() (pyoomph.meshes.mesh.ODEStorageMesh method) nboundary_element() (pyoomph.meshes.mesh.ODEStorageMesh method) nboundary_node() (pyoomph.meshes.mesh.ODEStorageMesh method) Ndisc (pyoomph.output.plotting.MatplotLibColorbar attribute) ndof() (pyoomph.generic.problem.Problem method) nelement() (pyoomph.meshes.mesh.ODEStorageMesh method) NeumannBC (class in pyoomph.meshes) (class in pyoomph.meshes.bcs) new_bulk_element_collection() (_pyoomph.MeshTemplate method) (pyoomph.meshes.mesh.MeshTemplate method)

new_domain() (pyoomph.meshes.mesh.MeshTemplate method) (pyoomph.meshes.MeshTemplate method) new_pure_gas() (in module pyoomph.materials.generic) new_pure_liquid() (in module pyoomph.materials.generic) new_sim() (pyoomph.utils.paramscan.ParallelParameterScan method) newton_solve() (pyoomph.generic.problem.Problem method) newton_solver_tolerance (pyoomph.generic.problem.Problem property) nnode() (pyoomph.meshes.mesh.ODEStorageMesh method) nodal_dimension() (_pyoomph.MeshTemplateElementCollection method) nodal_interpolate_along_boundary() (pyoomph.meshes.mesh.ODEStorageMesh method) nodal_interpolate_from() (pyoomph.meshes.mesh.ODEStorageMesh method) node_pt() (pyoomph.meshes.mesh.ODEStorageMesh method) nondim() (in module pyoomph.expressions.generic) nondim_size() (pyoomph.meshes.mesh.MeshTemplate method) (pyoomph.meshes.MeshTemplate method) norm (pyoomph.output.plotting.MatplotLibColorbar attribute) NoSlipBC (class in pyoomph.equations.navier_stokes) nrefined() (pyoomph.meshes.mesh.ODEStorageMesh method) nsub_mesh() (pyoomph.generic.problem.Problem method) ntime_stepper() (pyoomph.generic.problem.Problem method) nunrefined() (pyoomph.meshes.mesh.ODEStorageMesh method)

O

ODEEquations (class in pyoomph.generic) (class in pyoomph.generic.codegen) ODEFileOutput (class in pyoomph.output.generic) ODEObservables (class in pyoomph.equations.generic) ODEStorageMesh (class in pyoomph.meshes.mesh) offset (pyoomph.meshes.bcs.PeriodicBC attribute) (pyoomph.meshes.PeriodicBC attribute) (pyoomph.output.plotting.MatplotLibColorbar attribute) on_apply_boundary_conditions() (pyoomph.generic.codegen.ODEEquations method) (pyoomph.generic.ODEEquations method) order (pyoomph.meshes.gmsh.GmshTemplate attribute)

orientation (pyoomph.output.plotting.MatplotLibColorbar attribute) OriginalUNIFAC (class in pyoomph.materials.UNIFAC.original) other_interface (pyoomph.meshes.bcs.PeriodicBC attribute) (pyoomph.meshes.PeriodicBC attribute) outer_derivative() (pyoomph.expressions.cb.CustomMathExpression method) output() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) output_at_increased_time() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) output_paraview() (pyoomph.meshes.mesh.ODEStorageMesh method) overload() (in module pyoomph.typings)

P

ParallelParameterScan (class in pyoomph.utils.paramscan) partial_t() (in module pyoomph.expressions.generic) partial_x() (in module pyoomph.expressions) partial_y() (in module pyoomph.expressions) partial_z() (in module pyoomph.expressions) passive_field (pyoomph.materials.generic.BaseMixedProperties attribute) PeriodicBC (class in pyoomph.meshes) (class in pyoomph.meshes.bcs) PeriodicDrivingResponse (class in pyoomph.utils.periodic_driving_response) PeriodicOrbit (class in pyoomph.generic.problem) perturb_dofs() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) piecewise_geq0() (in module pyoomph.expressions) pin() (pyoomph.equations.contact_angle.StickSlipContactLine method) (pyoomph.generic.codegen.ODEEquations method) (pyoomph.generic.ODEEquations method) pin_redundant_lagrange_multipliers() (pyoomph.generic.codegen.InterfaceEquations method) (pyoomph.generic.InterfaceEquations method) PinnedContactLine (class in pyoomph.equations.contact_angle) PinnedContactLineWithCollapsePrevention (class in pyoomph.equations.contact_angle) plane_surface() (pyoomph.meshes.gmsh.GmshTemplate method) plot_in_dedicated_process (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) plotter (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) PlotTransform (class in pyoomph.output.plotting) point() (pyoomph.meshes.gmsh.GmshTemplate method) PointMesh (class in pyoomph.meshes.simplemeshes) PoissonEquation (class in pyoomph.equations.poisson) PoissonFarFieldMonopoleCondition (class in pyoomph.equations.poisson) PorousFront (class in pyoomph.equations.darcy) PorousNavierStokesConnection (class in pyoomph.equations.darcy) position (pyoomph.output.plotting.MatplotLibOverlayBase attribute) precice_config_file (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) precice_initialise() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) precice_participant (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) precice_run() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) prepare_interpolation() (pyoomph.meshes.mesh.ODEStorageMesh method) prepare_zeta_interpolation() (pyoomph.meshes.mesh.ODEStorageMesh method) preprocess_order (pyoomph.output.plotting.MatplotLibOverlayBase attribute) Problem (class in pyoomph.generic) (class in pyoomph.generic.problem) process_eigenvectors() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) prune_dead_nodes() (pyoomph.meshes.mesh.ODEStorageMesh method) PseudoElasticMesh (class in pyoomph.equations.ALE) PureGasProperties (class in pyoomph.materials.generic) PureLiquidProperties (class in pyoomph.materials.generic) PureSolidProperties (class in pyoomph.materials.generic) pyoomph module pyoomph.equations module pyoomph.equations.advection_diffusion module pyoomph.equations.ALE module pyoomph.equations.cahn_hilliard module pyoomph.equations.contact_angle module pyoomph.equations.darcy module pyoomph.equations.generic module pyoomph.equations.harmonic_oscillator module pyoomph.equations.helmholtz module pyoomph.equations.kuramoto_sivashinsky module pyoomph.equations.low_order_NSCH module pyoomph.equations.lubrication module pyoomph.equations.multi_component module pyoomph.equations.navier_stokes module pyoomph.equations.NSCH module pyoomph.equations.ode module pyoomph.equations.poisson module pyoomph.equations.potential_flow module pyoomph.equations.solid module pyoomph.equations.stokes_stream_func module pyoomph.equations.SUPG module pyoomph.equations.topological_changes module pyoomph.equations.tracers module pyoomph.expressions module pyoomph.expressions.cb module pyoomph.expressions.coordsys module pyoomph.expressions.generic module

pyoomph.expressions.interpol module pyoomph.expressions.phys_consts module pyoomph.expressions.tensor_funcs module pyoomph.expressions.units module pyoomph.expressions.utils module pyoomph.generic module pyoomph.generic.assembly module pyoomph.generic.ccompiler module pyoomph.generic.codegen module pyoomph.generic.mpi module pyoomph.generic.problem module pyoomph.jitbridge module pyoomph.materials module pyoomph.materials.activity module pyoomph.materials.default_materials module pyoomph.materials.generic module pyoomph.materials.mass_transfer module pyoomph.materials.surfactant_isotherms module pyoomph.materials.UNIFAC module pyoomph.materials.UNIFAC.aiomfac module pyoomph.materials.UNIFAC.dortmund module pyoomph.materials.UNIFAC.original module pyoomph.meshes module pyoomph.meshes.bcs module pyoomph.meshes.curved_entities module pyoomph.meshes.droplet_meshes module pyoomph.meshes.gmsh module pyoomph.meshes.interpolator module pyoomph.meshes.mesh module pyoomph.meshes.meshdatacache module pyoomph.meshes.PFEM module pyoomph.meshes.remesher module pyoomph.meshes.simplemeshes module pyoomph.meshes.zeta module pyoomph.output module pyoomph.output.generic module pyoomph.output.latex module pyoomph.output.meshio module pyoomph.output.plotting module pyoomph.output.states module pyoomph.solvers module pyoomph.solvers.generic module pyoomph.solvers.load_solver_from_cmd_line module pyoomph.solvers.pardiso module pyoomph.solvers.scipy module pyoomph.typings module pyoomph.utils module pyoomph.utils.bifurcation_gui module pyoomph.utils.dropgeom module pyoomph.utils.lyapunov module pyoomph.utils.num_text_out module pyoomph.utils.paramscan module pyoomph.utils.periodic_driving_response module pyoomph.utils.smallest_circle module

Q

quiet() (pyoomph.generic.problem.Problem method)

R

rational_num() (in module pyoomph.expressions.generic) real_part() (in module pyoomph.expressions) rebuild_global_mesh() (pyoomph.generic.problem.Problem method) RectangularQuadMesh (class in pyoomph.meshes) (class in pyoomph.meshes.simplemeshes) redefine_problem() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) refine_base_mesh() (pyoomph.meshes.mesh.ODEStorageMesh method) refine_eigenfunction() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) refine_uniformly() (pyoomph.generic.problem.Problem method) RefineToLevel (class in pyoomph.equations.generic) RefineToMaxLevel (in module pyoomph.equations.generic) register() (pyoomph.materials.generic.BaseGasProperties class method) (pyoomph.materials.generic.BaseLiquidProperties class method) (pyoomph.materials.generic.BaseSolidProperties class method) (pyoomph.materials.generic.MaterialProperties class method) (pyoomph.materials.generic.MixtureGasProperties class method) (pyoomph.materials.generic.MixtureLiquidProperties class method) (pyoomph.materials.generic.PureGasProperties class method) (pyoomph.materials.generic.PureLiquidProperties class method) (pyoomph.materials.generic.PureSolidProperties class method) (pyoomph.materials.generic.SurfactantProperties class method) remesh_handler_during_continuation() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) remesh_if_necessary() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) remesher (pyoomph.meshes.mesh.MeshTemplate attribute) (pyoomph.meshes.MeshTemplate attribute) Remesher2d (class in pyoomph.meshes.remesher) remeshing_necessary() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) RemeshingOptions (class in pyoomph.equations.generic) RemeshMeshSize (class in pyoomph.equations.generic) RemeshWhen (class in pyoomph.equations.generic) remove_boundary_nodes() (pyoomph.meshes.mesh.ODEStorageMesh method) remove_boundary_nodes_of_bound() (pyoomph.meshes.mesh.ODEStorageMesh method)

remove_macro_elements_after_initial_adaption (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) reorder_nodes() (pyoomph.meshes.mesh.ODEStorageMesh method) required_opposite_parent_type (pyoomph.generic.codegen.InterfaceEquations attribute) (pyoomph.generic.InterfaceEquations attribute) required_parent_type (pyoomph.equations.advection_diffusion.AdvectionDiffusionInfinity attribute) (pyoomph.equations.ALE.EnforcedInterfacialLaplaceSmoothing attribute) (pyoomph.equations.ALE.EnforcedInterfacialLaplaceSmoothingCorner attribute) (pyoomph.equations.ALE.StabilizeElementSizeAtMovingInterface attribute) (pyoomph.equations.cahn_hilliard.CahnHilliardWettingInterface attribute) (pyoomph.equations.cahn_hilliard.SimpleNSCHWettingInterface attribute) (pyoomph.equations.contact_angle.DynamicContactLineEquations attribute) (pyoomph.equations.darcy.PorousFront attribute) (pyoomph.equations.darcy.PorousNavierStokesConnection attribute) (pyoomph.equations.lubrication.LubricationBoundary attribute) (pyoomph.equations.lubrication.LubricationBoundaryByLagrange attribute) (pyoomph.equations.multi_component.BalanceGravityAtFarField attribute) (pyoomph.equations.multi_component.SurfactantsAtSolidInterface attribute) (pyoomph.equations.multi_component.TemperatureHeatFlux attribute) (pyoomph.equations.navier_stokes.ConnectVelocityAtInterface attribute) (pyoomph.equations.navier_stokes.NavierStokesFreeSurface attribute) (pyoomph.equations.navier_stokes.NavierStokesPrescribedNormalVelocity attribute) (pyoomph.equations.navier_stokes.NavierStokesSlipLength attribute) (pyoomph.equations.navier_stokes.StokesFlowRadialFarField attribute) (pyoomph.equations.poisson.PoissonFarFieldMonopoleCondition attribute) (pyoomph.equations.stokes_stream_func.StreamFunctionFromVelocityInterface attribute) (pyoomph.generic.codegen.InterfaceEquations attribute) (pyoomph.generic.InterfaceEquations attribute) requires_interior_facet_terms (pyoomph.generic.codegen.BaseEquations attribute) reset_arc_length_parameters() (pyoomph.generic.problem.Problem method) ResidualContribution (class in pyoomph.generic) (class in pyoomph.generic.codegen) resolve_copy_master_node() (pyoomph.meshes.mesh.ODEStorageMesh method) rotate_eigenvectors() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) run() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) run_all() (pyoomph.utils.paramscan.ParallelParameterScan method)

S

sample_all_properties_to_text_files() (pyoomph.materials.generic.BaseGasProperties method) (pyoomph.materials.generic.BaseLiquidProperties method) (pyoomph.materials.generic.BaseSolidProperties method) (pyoomph.materials.generic.MaterialProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) (pyoomph.materials.generic.PureGasProperties method) (pyoomph.materials.generic.PureLiquidProperties method) (pyoomph.materials.generic.PureSolidProperties method) (pyoomph.materials.generic.SurfactantProperties method) sample_property_to_text_file() (pyoomph.materials.generic.BaseGasProperties method) (pyoomph.materials.generic.BaseLiquidProperties method) (pyoomph.materials.generic.BaseSolidProperties method) (pyoomph.materials.generic.MaterialProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) (pyoomph.materials.generic.PureGasProperties method) (pyoomph.materials.generic.PureLiquidProperties method) (pyoomph.materials.generic.PureSolidProperties method) (pyoomph.materials.generic.SurfactantProperties method) ScalarField (class in pyoomph.generic) (class in pyoomph.generic.codegen) scale_factor() (in module pyoomph.expressions.generic) Scaling (class in pyoomph.equations.generic) scaling (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) set_activity_coefficients_by_unifac() (pyoomph.materials.generic.MixtureLiquidProperties method) set_advancing_pin_below_angle() (pyoomph.equations.contact_angle.StickSlipContactLine method) set_advancing_unpin_above_angle() (pyoomph.equations.contact_angle.StickSlipContactLine method) set_all_nodes_as_boundary_nodes() (_pyoomph.MeshTemplateElementCollection method) set_analytic_hessian_products() (pyoomph.generic.problem.Problem method) set_by_weighted_average() (pyoomph.materials.generic.BaseMixedProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) set_c_compiler() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) set_coordinate_system() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) set_current_dofs() (pyoomph.generic.problem.Problem method) set_current_pinned_values() (pyoomph.generic.problem.Problem method) set_current_time() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) set_diffusion_coefficient() (pyoomph.materials.generic.BaseMixedProperties method) (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) set_diffusion_coefficient_by_Fuller_eq() (pyoomph.materials.generic.MixtureGasProperties method) set_driving_frequency() (pyoomph.utils.periodic_driving_response.PeriodicDrivingResponse method) set_driving_omega() (pyoomph.utils.periodic_driving_response.PeriodicDrivingResponse method) set_eigensolver() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) set_element_code() (_pyoomph.MeshTemplateElementCollection method) set_FD_step_used_in_get_hessian_vector_products() (pyoomph.generic.problem.Problem method) set_history_dofs() (pyoomph.generic.problem.Problem method) set_initial_condition() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) (pyoomph.meshes.mesh.ODEStorageMesh method) set_interpolate_new_interface_dofs() (in module _pyoomph) set_jit_include_dir() (in module _pyoomph) set_lagrangian_dimension() (_pyoomph.MeshTemplateElementCollection method) set_lagrangian_nodal_coordinates() (pyoomph.meshes.mesh.ODEStorageMesh method) set_latent_heat_of_evaporation() (pyoomph.materials.generic.MixtureLiquidProperties method) set_linear_solver() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) set_mass_density_from_ideal_gas_law() (pyoomph.materials.generic.MixtureGasProperties method) (pyoomph.materials.generic.PureGasProperties method) set_mass_transfer_model() (pyoomph.materials.generic.BaseInterfaceProperties method) (pyoomph.materials.generic.DefaultLiquidGasInterface method) (pyoomph.materials.generic.LiquidGasInterfaceProperties method) set_mesh_pt() (pyoomph.generic.problem.Problem method) set_nodal_dimension() (_pyoomph.MeshTemplateElementCollection method) set_output_directory() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) set_output_scale() (pyoomph.meshes.mesh.ODEStorageMesh method) set_receding_pin_above_angle() (pyoomph.equations.contact_angle.StickSlipContactLine method) set_receding_unpin_below_angle() (pyoomph.equations.contact_angle.StickSlipContactLine method) set_reference_scaling_to_problem() (pyoomph.materials.generic.BaseLiquidProperties method) (pyoomph.materials.generic.MixtureLiquidProperties method) (pyoomph.materials.generic.PureLiquidProperties method) (pyoomph.materials.generic.SurfactantProperties method)

set_scaling() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) set_Solver_callback() (in module _pyoomph) set_spatial_error_estimator_pt() (pyoomph.meshes.mesh.ODEStorageMesh method) set_surface_diffusivity() (pyoomph.materials.generic.DefaultLiquidGasInterface method) (pyoomph.materials.generic.LiquidGasInterfaceProperties method) set_tolerance_for_singular_jacobian() (in module _pyoomph) set_unifac_groups() (pyoomph.materials.generic.PureLiquidProperties method) (pyoomph.materials.generic.SurfactantProperties method) set_use_eigen_Z2_error_estimators() (in module _pyoomph) set_value() (pyoomph.meshes.mesh.ODEStorageMesh method) set_vapor_pressure_by_Antoine_coeffs() (pyoomph.materials.generic.PureLiquidProperties method) (pyoomph.materials.generic.SurfactantProperties method) set_vapor_pressure_by_raoults_law() (pyoomph.materials.generic.MixtureLiquidProperties method) set_verbosity_flag() (in module _pyoomph) set_view() (pyoomph.output.plotting.MatplotlibPlotter method) SetCoordinateSystem (class in pyoomph.equations.generic) SetLagrangianToEulerianAfterSolve (class in pyoomph.equations.ALE) setup_Dirichlet_conditions() (pyoomph.meshes.mesh.ODEStorageMesh method) setup_for_stability_analysis() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) setup_initial_conditions() (pyoomph.meshes.mesh.ODEStorageMesh method) setup_interior_boundary_elements() (pyoomph.meshes.mesh.ODEStorageMesh method) shift_time_values() (pyoomph.generic.problem.Problem method) signum() (in module pyoomph.expressions) SimpleNSCH (class in pyoomph.equations.cahn_hilliard) SimpleNSCHWettingInterface (class in pyoomph.equations.cahn_hilliard) SimulationNamespace (class in pyoomph.utils.paramscan) sin() (in module pyoomph.expressions) SingleParallelParameterSimulation (class in pyoomph.utils.paramscan) sinh() (in module pyoomph.expressions) SolidNormalTraction (class in pyoomph.equations.solid) SolidTraction (class in pyoomph.equations.solid) solve() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) solve_eigenproblem() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) sparse_assembly_method (pyoomph.generic.problem.Problem property) SpatialErrorEstimator (class in pyoomph.equations.generic) SpatialIntegrationOrder (class in pyoomph.equations.generic) specific_heat_capacity (pyoomph.materials.generic.BaseGasProperties attribute) (pyoomph.materials.generic.BaseLiquidProperties attribute) (pyoomph.materials.generic.BaseSolidProperties attribute) (pyoomph.materials.generic.MaterialProperties attribute) SphericalOctantMesh (class in pyoomph.meshes.simplemeshes) spline() (pyoomph.meshes.gmsh.GmshTemplate method) split_response_amplitude_and_phase() (pyoomph.utils.periodic_driving_response.PeriodicDrivingResponse method) square_root() (in module pyoomph.expressions) StabilizeElementSizeAtMovingInterface (class in pyoomph.equations.ALE) StandardMassTransferModelLiquidGas (in module pyoomph.materials.mass_transfer) starts_supercritically() (pyoomph.generic.problem.PeriodicOrbit method) state_of_matter (pyoomph.materials.generic.MaterialProperties attribute) states_compression_level (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) steady_newton_solve() (pyoomph.generic.problem.Problem method) StickSlipContactLine (class in pyoomph.equations.contact_angle) StokesEquations (class in pyoomph.equations.navier_stokes) StokesFlowRadialFarField (class in pyoomph.equations.navier_stokes) StreamFunctionFromVelocity (class in pyoomph.equations.stokes_stream_func) StreamFunctionFromVelocityInterface (class in pyoomph.equations.stokes_stream_func) subexpression() (in module pyoomph.expressions.generic) SubstituteVarByExpression (class in pyoomph.equations.generic) SupportsFloat (class in pyoomph.typings) surface_diffusivity (pyoomph.materials.generic.SurfactantProperties attribute) surface_tension (pyoomph.materials.generic.BaseInterfaceProperties attribute) (pyoomph.materials.generic.DefaultLiquidGasInterface attribute) (pyoomph.materials.generic.LiquidGasInterfaceProperties attribute) surfactant_adsorption_rate (pyoomph.materials.generic.DefaultLiquidGasInterface attribute) (pyoomph.materials.generic.LiquidGasInterfaceProperties attribute) SurfactantIsotherm (class in pyoomph.materials.surfactant_isotherms) SurfactantProperties (class in pyoomph.materials.generic) surfactants (pyoomph.materials.generic.LiquidGasInterfaceProperties attribute) SurfactantsAtSolidInterface (class in pyoomph.equations.multi_component) switch_to_hopf_orbit() (pyoomph.generic.Problem method) (pyoomph.generic.problem.Problem method) sym() (in module pyoomph.expressions) symbolic_diff() (in module pyoomph.expressions.generic) symmetrize_min_max (pyoomph.output.plotting.MatplotLibColorbar attribute)

T

tan() (in module pyoomph.expressions) tanh() (in module pyoomph.expressions) TemperatureAdvectionConductionEquation (class in pyoomph.equations.multi_component) TemperatureConductionEquation (class in pyoomph.equations.multi_component) TemperatureHeatFlux (class in pyoomph.equations.multi_component) TemperatureInfinityEquations (class in pyoomph.equations.multi_component) TemporalErrorEstimator (class in pyoomph.equations.generic) test_scale_factor() (in module pyoomph.expressions.generic) testfunction() (in module pyoomph.expressions.generic) TestScaling (class in pyoomph.equations.generic) textcolor (pyoomph.output.plotting.MatplotLibOverlayBase attribute) TextFileOutput (class in pyoomph.output.generic) textsize (pyoomph.output.plotting.MatplotLibOverlayBase attribute) thermal_conductivity (pyoomph.materials.generic.BaseGasProperties attribute) (pyoomph.materials.generic.BaseLiquidProperties attribute) (pyoomph.materials.generic.BaseSolidProperties attribute) (pyoomph.materials.generic.MaterialProperties attribute)

thickness (pyoomph.output.plotting.MatplotLibColorbar attribute) ThinLayerThermalConductionEquation (class in pyoomph.equations.multi_component) ticsize (pyoomph.output.plotting.MatplotLibColorbar attribute) time_pt() (pyoomph.generic.problem.Problem method) time_scheme() (in module pyoomph.expressions.generic) time_stepper_pt() (pyoomph.generic.problem.Problem method) timestepper (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) to_numpy() (pyoomph.meshes.mesh.ODEStorageMesh method) trace() (in module pyoomph.expressions) TracerParticles (class in pyoomph.equations.tracers) transpose() (in module pyoomph.expressions.generic) TypeVar (class in pyoomph.typings)

U

UNIFACLikeActivityModel (class in pyoomph.materials.activity) unit_matrix() (in module pyoomph.expressions.generic) unit_vector() (in module pyoomph.expressions.generic) unpin() (pyoomph.equations.contact_angle.StickSlipContactLine method) (pyoomph.generic.codegen.ODEEquations method) (pyoomph.generic.ODEEquations method) UnpinnedContactLine (class in pyoomph.equations.contact_angle)

unrefine_uniformly() (pyoomph.generic.problem.Problem method) unsteady_newton_solve() (pyoomph.generic.problem.Problem method) update_phase_constraint() (pyoomph.generic.problem.PeriodicOrbit method) update_tensor_cache() (pyoomph.generic.assembly.FixedMeshMaxQuadraticNonlinearAssembly method) upper_convected_derivative() (in module pyoomph.expressions.generic) use_macro_elements (pyoomph.meshes.gmsh.GmshTemplate attribute) use_subexpressions (pyoomph.expressions.coordsys.BaseDifferentialGeometryCoordinateSystem attribute)

V

VanDerWaalsIsotherm (class in pyoomph.materials.surfactant_isotherms) vapor_pressure (pyoomph.materials.generic.PureLiquidProperties attribute) (pyoomph.materials.generic.SurfactantProperties attribute) vapor_pressure_for (pyoomph.materials.generic.MixtureLiquidProperties attribute) var() (in module pyoomph.expressions.generic) var_and_test() (in module pyoomph.expressions) vector() (in module pyoomph.expressions.generic)

vector_component_suffixes (pyoomph.expressions.coordsys.BaseDifferentialGeometryCoordinateSystem attribute) VectorField (class in pyoomph.generic) (class in pyoomph.generic.codegen) VolmerIsotherm (class in pyoomph.materials.surfactant_isotherms) volume (pyoomph.utils.dropgeom.DropletGeometry attribute) VolumeEnforceStorage (class in pyoomph.equations.ALE) VolumeEnforcingBoundary (class in pyoomph.equations.ALE)

W

warn_about_unused_global_parameters (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute) Weak() (in module pyoomph.expressions.generic) weak() (in module pyoomph.expressions.generic) WeakContribution (class in pyoomph.generic) (class in pyoomph.generic.codegen)

WenzelContactLine (class in pyoomph.equations.contact_angle) with_corners() (pyoomph.equations.ALE.EnforcedInterfacialLaplaceSmoothing method) with_pressure_fixation() (pyoomph.equations.navier_stokes.StokesEquations method) with_pressure_integral_constraint() (pyoomph.equations.navier_stokes.StokesEquations method) write_states (pyoomph.generic.Problem attribute) (pyoomph.generic.problem.Problem attribute)

X

xmargin (pyoomph.output.plotting.MatplotLibOverlayBase attribute)

xshift (pyoomph.output.plotting.MatplotLibOverlayBase attribute)

Y

YeohSmoothedMesh (class in pyoomph.equations.ALE) ymargin (pyoomph.output.plotting.MatplotLibOverlayBase attribute)

YoungDupreContactLine (class in pyoomph.equations.contact_angle) yshift (pyoomph.output.plotting.MatplotLibOverlayBase attribute)

Z

zindex (pyoomph.output.plotting.MatplotLibOverlayBase attribute)